PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g006570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 325aa    MW: 36177.8 Da    PI: 5.4487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g006570.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95.1e-154493255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +h+  E+rRR++iN++f+ Lr l+P+     ++K + a+ L ++++Y+++Lq
  Sopen05g006570.1 44 RSKHSVTEQRRRSKINERFQMLRNLIPHT----DQKRDTASFLFEVIQYVQYLQ 93
                      899*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-2240114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1840114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4214292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-144497No hitNo description
SMARTSM003535.5E-114898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKSGKGHHVE EEEDEYDFGS NRDATPSSNS TKDGKNSDKA NAIRSKHSVT EQRRRSKINE  60
RFQMLRNLIP HTDQKRDTAS FLFEVIQYVQ YLQDTVQKYE GSYQPWSSEP TKLMPWRNSQ  120
WRAQSFPANP QALNNGTDAG PTYSGRFDEN LLTVTSSMQA NQRNPLESHP GGDVKSMDQG  180
KELARTVIAT SMPLQASMPV PFQNDSAFSD SLPTPASDEC PSTTNALNDQ EFMVEGGTIN  240
FSNTYSQGLL NSLTHALQAT GLDLSQASIS VQINLGKRAN KERALGPSVA KDTENPIPAP  300
GDQFLEFRDT NNDEELNQGQ KRLKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076812.10.0PREDICTED: transcription factor BIM2-like isoform X2
SwissprotQ9CAA45e-91BIM2_ARATH; Transcription factor BIM2
TrEMBLK4BXQ40.0K4BXQ4_SOLLC; Uncharacterized protein
STRINGSolyc05g011810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-92BES1-interacting Myc-like protein 2